• JOREK Website → Send an e-mail if something is missing | Add to the gallery
• Information for New JOREK Users | Code License
• Publication Rules | JOREK Logo | jorek-preprint@jorek.eu
• Frequently Asked Questions (FAQ)
• Contributing to the Docs

Compiling and Running

• Getting started
  • Tutorials
  • Compile | Hard-Coded Parameters | Preprocessor Flags
  • Run | Leonardo-CPU | Pitagora-CPU | Pitagora-GPU | IPP Garching | ITER Cluster | EUROfusion Gateway | TGCC-CEA | MacOS
• List of Input Parameters
• Diagnostics and Scripts
  • JOREK-IMAS

Code Development

• Development Workflow
• Regression Tests

Physics Models

• Notation Conventions
• Normalization
• Vector Identities
• Coordinate Systems
• Base Fluid Models
  • Tokamak Reduced MHD
  • Tokamak Full MHD
  • Stellarator Reduced MHD
• Kinetic Particle Module
• Model Extensions
  • Free Boundary Extension (STARWALL, CARIDDI)
  • Impurities: fluid model | marker model | kinetic model
    • ADAS Atomic Data
  • Neutrals: fluid model | kinetic model
  • REs: fluid model | kinetic model

Numerics and Tools

• Spatial Discretization | Grids
• Time Integration
• Element Matrix FFT
• Solver and Preconditioner
• Random-Number Generators
• HDF5 Tools

Howto…

• Get started with JOREK, JOREK-STARWALL, JOREK-CARIDDI and JOREK Diagnostics
• Set up a JOREK simulation grid
• Convert EFIT equilibrium data into JOREK input with eqdsk2jorek
• Get D_perp and ZK_perp for stationary profiles
• Check energy conservation
• Run with diamagnetic drift and neoclassical effects and include diamagnetic drift in the viscosity term
• Run with Taylor-Galerkin Stabilization and correct negative densities / temperatures (workaround)
• Run with RMPs (old boundary conditions, without STARWALL)
• Calculate B outside and inside the JOREK grid (jorek2_fields_xyz)
• Calculate the total wall forces (needs JOREK-STARWALL)
• Run including Ohmic heating
• Run with Sheath heat-flux BC
• Run an MGI simulation and an SPI simulation
• Set up Spitzer resistivity and anisotropic heat diffusion
• Create an X-point plasma from a limiter plasma
• Run with mode groups in preconditioner
• Choose boundary conditions
• How to use shock capturing features
• Run stellarator simulations
• Plot equation terms in VTK
• Use phase space projections
• Assess particle wall loads with the particle tracker
• Assess fluid loads on 3D walls with field line tracing
• Generate Poincaré plots with the particle tracker
• Runaway electron physics in the particle tracker
• Use the controller module
• Run with Non-linear time-stepping (Newton iterations)
• Reconstruct how namelist input parameters were changed
• Show time in Paraview plots
• Variable MultiScale (VMS) Stabilization in full MHD model 750
• Compile and run the Particle Fast Camera
• Compress the response matrices in the free-boundary and resistive wall extension
• Run the stellarator model with the divertor region
• Run with kinetic neutrals and impurities
• Run particle simulations with neutral neutral collisions
• Activate the inward pinch term in the density equation
• Computing parallel electric field $E_{\vert\vert}$ in JOREK
• Helicity conservation

Machines, Coordinates, Geometry, Synthetic Diagnostics, Reference Scenarios

• ITER
• JET
• ASDEX Upgrade